deepNEC-2.0

deepNEC-2.0

About
Prediction
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Input Options

Prediction Options

Sequence Type:

Protein

Nucleotide

Accession ID:

NCBI

Uniprot

Upload a FASTA file:

Upload

Paste FASTA sequence:

Email address (Optional)

Select a Phase to run

Phase 1 - Enzyme vs Non-enzyme

Phase 2 - Nitrogen vs Non-nitrogen

Phase 3 - Nitrogen Classification

Phase 4 - EC Number Classification

Select a class for EC number prediction in Phase 4

Select a Prediction Method

DNN

Homology

DNN + Homology

Select a BLAST Program

BLAST

Diamond BLAST

Select BLAST Parameters

E-value

Identity (%)

Coverage (%)

About Prediction Phases

Phase 1 - This is first phase where a query sequence is being predicted as enzyme or non-enzyme

Phase 2 - This phase will run phase1 first followed by phase2 where a query sequence is first predicted as enzyme or non-enzyme followed by prediction of enzyme as Nitrogen biochemical network-related or Non-nitrogen biochemical network-related .

Phase 3 - This phase classify Nitrogen biochemical network-related enzymes predicted in Phase 2 in 9 classes

Phase 4 - This phase further predict the EC number for a selected Nitrogen biochemical network-related enzymes class predicted in phase 3

About Prediction Strategy

DNN: Deep Neural Network based prediction. Which uses trained models for prediction.

Homology: Similarity based prediction. Uses blast /diamond(fast) for finding similarity.

DNN + Homology: This approach combines results of Deep Neural Network based prediction and Similarity based prediction.

Error in Job Submission

Error.

You have successfully submitted a query to the nitrogen metabolism enzyme prediction service at deepNEC.

Please be patient, your query is being processed

Your results will be available at the below link. After successfull completion of the job, this page will be redirected to the results page.

You have successfully submitted a query to the deepnec-2.0.

Bookmark the above link if you want to access your results later. Files will be removed one month after the end of the job.

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