deepNEC-2.0

The standalone version of deepNEC can be downloaded from the following:

Stable version: https://bioinfo.usu.edu/deepnec-2.0/download/deepnec-standalone-2.0.tar.gz

##How to install


                        Clone the repository 




Download the installer: [Miniconda installer for Linux.](https://docs.conda.io/en/latest/miniconda.html#linux-installers)


tar -xvzf deepnec-2.0.tar.gz 


cd deepnec-standalone 


Create and activate a conda environment 


conda env create -f environment.yml 

conda activate deepNEC 

pip install .

#How to run


                        deepNEC -i ./example/test.fasta -o output -m DNN