Standalone command-line package
Run LegumeLoc locally
Download the legume protein localization models, Python utilities, and example inputs for reproducible local analysis.
Protein FASTA
Accepts one or more amino-acid sequences. Nucleotide sequences are not supported.
Two strategies
Choose Fast dipeptide features or Sensitive tripeptide features.
Research software
Download the standalone package for local research use. Reuse rights remain reserved unless a license is added.
Recommended setup
Install with conda
# 1. Extract the package
tar -xvzf LegumeLoc.tar.gz
cd LegumeLoc
# 2. Create the recommended conda environment
conda env create -f environment.yml
conda activate LegumeLoc
# 3. Install LegumeLoc
pip3 install .Alternative setup
Install with system Python 3
Use this route only when the required dependencies are already available in your Python environment.
tar -xvzf LegumeLoc.tar.gz
cd LegumeLoc
pip3 install .Example command
Run a prediction
python LegumeLoc.py -i ./example/test.fasta -o output -l level3 -m fast-iInput FASTA file-oOutput directory-lHighest prediction level-mfast or sensitive strategy