Let's Get Started
On this page, you can download HPIpy package, and find additional resources to help you get started.
Download
Obtain the latest version of HPIpy using one of the options below:
- Using link:
wget https://kaabil.net/hpipy/downloads/hpipy.tar.gz - Clone GitHub repository:
git clone https://github.com/usubioinfo/hpipy.git
Installation Instructions
For detailed installation instructions, please refer to the instructions on the User Guide page.
Dependencies
- For Gene Ontology (GO) Similarity model, InterProScan is required to be installed locally, which can be obtained from InterPro.
- Alternatively, the users can provide 2 files (one for host and other for pathogen species) containing protein IDs and their respective GO term(s) in a comma- or tab-separated file
Source Code
The source code for HPIpy is also available on GitHub. You can clone or download the repository using the button below:
Interaction Databases
Various standard protein-protein and domain-domain interaction databases that were used as templates for the predictions are mentioned below. The interaction data from these databases was stringently filtered according to the available models.
