AtSubP2

AtSubP 2.0

About Prediction Download Help

Input Options

Accession ID:

NCBI

Uniprot

Upload a FASTA file:

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Paste FASTA sequence:

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Prediction Options

Select level for prediction

Single Localization vs Dual Localization

Single Localization Classification

Dual Localization Classification

Single-Pass vs Multi-Pass Membrane

Select model for prediction

Fast

Sensitive

About Prediction Levels

Level I: This is first level where a query sequence is being predicted as single localization or dual localization

Level II: This level will run leve1 first followed by level2 where a query sequence is first predicted as single localization or dual localization followed by classifying single localization into 12 classes. 'Vacuole', 'Cytoplasm', 'Peroxisome', 'Golgi', 'Endoplasmic', 'Memebrane', 'Secreted', 'Cell', 'Mitochondria', 'Endosome', 'Plastid','Nucleus'.

Level III: This level will execute level1 and level2 followed by classifying dual localization in 9 classes. 'Cell-memebrane & Membrane', 'Cytoplasm & Membrane','Endoplasmic reticulum & Membrane','Golgi & Membrane','Membrane & Mitochondria','Membrane & Plastid','Plastid & Mitochondria','Nucleus & Chromosome','Nucleus & Cytoplasm'.

level IV: This phase will execute level1, level2 and level3 followed by classifying Memebrane predicted in level2 into single-pass or multi-pass.

About Prediction Strategy

There are two prediction strategy available in RSLPred-2.0 [Fast, Sensitive]. There is an icon with general information about the tool and a brief explanation on how it works.

The 'Fast' approach model provides a fast prediction. This approach is useful in annotationg huge number of proteins.

The 'Sensitive' approach model provides a more sensitive prediction at the cost of longer computation time. This approach is useful in annotationg small number of proteins with high-quality prediction.

Error in Job Submission

Error.


            
                You have successfully submitted a query to the Arabidopsis thaliana  Subcellular Localization prediction service at AtSubP-2.0.
                Please be patient, your query is being processed 
                
                Your results will be available at the below link. After successfull completion of the job, this page will be redirected 
                    to the results page.
                You have successfully submitted a query to the AtSubP2. 
                Bookmark the above link if you want to access your results later. Files will be removed one month after the end of the job.

Submit another job

Accession ID:

Select level for prediction

Select model for prediction

You have successfully submitted a query to the Arabidopsis thaliana Subcellular Localization prediction service at AtSubP-2.0.

Please be patient, your query is being processed

Your results will be available at the below link. After successfull completion of the job, this page will be redirected to the results page.

You have successfully submitted a query to the AtSubP2.

Bookmark the above link if you want to access your results later. Files will be removed one month after the end of the job.